Merge pull request #724 from AlexsLemonade/allyhawkins/v0.7.3

v0.7.3

external-instructions.md

@@ -78,12 +78,12 @@ Using the above command will run the workflow from the `main` branch of the work
 To update to the latest released version you can run `nextflow pull AlexsLemonade/scpca-nf` before the `nextflow run` command.
 
 To be sure that you are using a consistent version, you can specify use of a release tagged version of the workflow, set below with the `-r` flag.
-The command below will pull the `scpca-nf` workflow directly from Github using the `v0.7.2` version.
+The command below will pull the `scpca-nf` workflow directly from Github using the `v0.7.3` version.
 Released versions can be found on the [`scpca-nf` repository releases page](https://github.com/AlexsLemonade/scpca-nf/releases).
 
 ```sh
 nextflow run AlexsLemonade/scpca-nf \
-  -r v0.7.2 \
+  -r v0.7.3 \
   -config <path to config file>  \
   -profile <name of profile>
 ```
@@ -312,7 +312,7 @@ If you will be analyzing spatial expression data, you will also need the Cell Ra
 
 If your compute nodes do not have internet access, you will likely have to pre-pull the required container images as well.
 When doing this, it is important to be sure that you also specify the revision (version tag) of the `scpca-nf` workflow that you are using.
-For example, if you would run `nextflow run AlexsLemonade/scpca-nf -r v0.7.2`, then you will want to set `-r v0.7.2` for `get_refs.py` as well to be sure you have the correct containers.
+For example, if you would run `nextflow run AlexsLemonade/scpca-nf -r v0.7.3`, then you will want to set `-r v0.7.3` for `get_refs.py` as well to be sure you have the correct containers.
 By default, `get_refs.py` will download files and images associated with the latest release.
 
 If your system uses Docker, you can add the `--docker` flag:

internal-instructions.md

@@ -82,7 +82,7 @@ Please refer to our [`CONTRIBUTING.md`](CONTRIBUTING.md#stub-workflows) for more
 When running the workflow for a project or group of samples that is ready to be released on ScPCA portal, please use the tag for the latest release:
 
 ```
-nextflow run AlexsLemonade/scpca-nf -r v0.7.2 -profile ccdl,batch --project SCPCP000000
+nextflow run AlexsLemonade/scpca-nf -r v0.7.3 -profile ccdl,batch --project SCPCP000000
 ```
 
 ### Processing example data

nextflow.config

@@ -5,7 +5,7 @@ manifest{
   homePage = 'https://github.com/AlexsLemonade/scpca-nf'
   mainScript = 'main.nf'
   defaultBranch = 'main'
-  version = 'v0.7.2'
+  version = 'v0.7.3'
 }
 
 // global parameters for workflows