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keep trying
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@katiesevans
katiesevans committed May 16, 2023
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Expand Up @@ -2,11 +2,13 @@ FROM continuumio/miniconda
MAINTAINER Katie Evans <katiesevans9@gmail.com>

RUN conda install -c bioconda bcftools=1.9 plink=1.90b6.12 bedtools=2.29.2
RUN conda install -c conda-forge pandoc=2.12 r=3.6.0 mscorefonts
RUN conda install -c conda-forge r-rlang r-ellipsis r-tidyverse=1.3.1 r-data.table r-lme4 r-knitr r-markdown r-futile.logger
RUN conda install -c conda-forge pandoc=2.12 r=4.1.1 mscorefonts
RUN conda install -c conda-forge "conda-forge/label/cf201901" r-tidyverse

RUN Rscript -e "install.packages('boot', dependencies=TRUE, repos='http://cran.us.r-project.org')"
RUN Rscript -e "install.packages('sommer', dependencies=TRUE, repos='http://cran.us.r-project.org')"
#r-data.table r-lme4 r-knitr r-markdown r-futile.logger

# RUN Rscript -e "install.packages('boot', dependencies=TRUE, repos='http://cran.us.r-project.org')"
# RUN Rscript -e "install.packages('sommer', dependencies=TRUE, repos='http://cran.us.r-project.org')"


# install other tools not avalible on conda cloud
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