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separate problem packages
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@katiesevans
katiesevans committed May 12, 2023
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5 changes: 4 additions & 1 deletion env/Dockerfile
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Expand Up @@ -13,9 +13,12 @@ RUN conda install -c bioconda bedtools=2.29.2
RUN conda install -c conda-forge r=3.6.0
RUN conda install -c conda-forge mscorefonts
RUN conda install -c conda-forge r-tidyverse r-data.table r-lme4 r-knitr r-markdown
RUN conda install -c r r-boot r-sommer
# RUN conda install -c r r-boot r-sommer
RUN conda install -c conda-forge r-futile.logger

RUN Rscript -e "install.packages('boot', dependencies=TRUE, repos='http://cran.us.r-project.org')"
RUN Rscript -e "install.packages('sommer', dependencies=TRUE, repos='http://cran.us.r-project.org')"


# install other tools not avalible on conda cloud
RUN apt-get --allow-releaseinfo-change update && apt-get install -y procps
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