sge-wynton

Sun Grid Engine (SGE) profile for cluster execution of Snakemake workflows on the UCSF Wynton cluster.

Modified from the offical Snakemake SGE Profile

Usage

Clone directory into home /wynton/home/{group}/{user}/

mkdir -p ~/.config/snakemake
cd ~/.config/snakemake
git clone git@github.com:AndrewsLabUCSF/sge-wynton.git

Executing workflows

snakemake -j 1 --profile sge-wynton

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
README.md		README.md
cluster.yaml		cluster.yaml
config.yaml		config.yaml
sge-cancel.py		sge-cancel.py
sge-jobscript.sh		sge-jobscript.sh
sge-status.py		sge-status.py
sge-submit-org.py		sge-submit-org.py
sge-submit.py		sge-submit.py