sge-wynton

Sun Grid Engine (SGE) profile for cluster execution of Snakemake workflows on the UCSF Wynton cluster.

Modified from the offical Snakemake SGE Profile

Usage

Clone directory into home /wynton/home/{group}/{user}/

mkdir -p ~/.config/snakemake
cd ~/.config/snakemake
git clone git@github.com:AndrewsLabUCSF/sge-wynton.git

Executing workflows

snakemake -j 1 --profile sge-wynton