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Angelos-Gk/README.md


Welcome to my Github profile, I'm Angelos Galanopoulos!

I've embarked on an exciting journey as a PhD student in Single Cell Genomics at Charité – Universitätsmedizin Berlin, supported by the German Cancer Aid and Else Kröner-Fresenius-Stiftung foundations. With a recently completed MSc in "Applied Bioinformatics" from Aristotle University of Thessaloniki, Greece, I've honed my skills in analyzing complex biological data, particularly focusing on single cell and bulk RNAseq datasets using tools like R, Python, and Bash scripting. My passion lies in unraveling the mysteries of cancer biology in the context of immunotherapy and blood malignancies. I'm enthusiastic about bridging the gap between wet lab experiments and computational analysis, delving into single cell immunogenomics data, and developing innovative analytical approaches to drive impactful research outcomes. Currently based in Berlin, I'm thrilled to be part of the vibrant research community at the Penter lab and eager to collaborate with fellow researchers to advance our understanding of cancer and pioneer new therapeutic strategies.

LinkedIn e-mail

bio logo Programming

bio logo Toolbox bio logo OS bio logo IDEs
R Python Bash SQL Github Linux Windows VSCode RStudio Jupyter

bio logo Bioinformatics tools

samtools FastQC MultiQC trimmomatic cutadapt hisat2 bwa bamtools vcftools varscan featureCounts GATK HOMER Picard Kraken2 krakentools krona Snakemake Bioconductor Biopython IGV

bio logo Github stats

Angelos' GitHub Stats

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  1. Ensembl-IDs-to-gene-symbols Ensembl-IDs-to-gene-symbols Public

    Convert Ensembl IDs to gene symbols

    R

  2. R-methylation-workflow R-methylation-workflow Public

    A pipeline to analyze methylation array data

    R

  3. RNAseq-data-manipulation RNAseq-data-manipulation Public

    Scripts on how to manipulate and visualize RNAseq data

    R

  4. single-cell-RNAseq-data-analysis single-cell-RNAseq-data-analysis Public

    A collection of R scripts on handling scRNAseq data

    R 1 1

  5. Variant-calling-workflow Variant-calling-workflow Public

    A variant calling workflow, starting from raw reads to variant identification

    Shell

  6. machine-learning-cancer-prediction machine-learning-cancer-prediction Public

    A script to predict cancer type based on gene expression values using a machine learning model

    Jupyter Notebook