chore: #1294: Extend SQl query.

MiscTestingAndDebuggingResources/ManualTesting/MatchPredictionValidation/exercise4/SQL_Homework_1_HomeworkCheck.sql

@@ -7,4 +7,8 @@ SELECT *
 FROM HomeworkSets h
 JOIN PatientDonorPairs pdp
 ON h.Id = pdp.HomeworkSet_Id
-ORDER BY HomeworkSet_Id, PatientId, DonorId
+ORDER BY HomeworkSet_Id, PatientId, DonorId
+
+SELECT *
+FROM PatientDonorPairs pdp
+WHERE IsProcessed = 0

MiscTestingAndDebuggingResources/ManualTesting/MatchPredictionValidation/exercise4/SQL_Homework_3_HomeworkResults.sql

@@ -0,0 +1,87 @@
+/*
+ *	SELECT INFO BY PATIENT AND DONOR ID
+ */
+
+-- SET THE FOLLOWING VARS
+DECLARE @PatientId varchar(16) = 'P000614'
+DECLARE @DonorId varchar(16) = 'D104155'
+DECLARE @MatchCountDenominator int = 10 -- i.e., "10" for x/10 search, "8" for x/8 search, etc.
+
+
+/*
+ * QUERIES
+ */
+
+-- select imputation summaries for patient and donor
+DECLARE @PatientImputationId int = (SELECT Id FROM ImputationSummaries WHERE ExternalSubjectId = @PatientId)
+DECLARE @DonorImputationId int = (SELECT Id FROM ImputationSummaries WHERE ExternalSubjectId = @DonorId)
+
+SELECT si.*, i.*
+FROM ImputationSummaries i
+JOIN SubjectInfo si
+ON i.ExternalSubjectId = si.ExternalId
+WHERE i.Id = @PatientImputationId
+
+SELECT si.*, i.*
+FROM ImputationSummaries i
+JOIN SubjectInfo si
+ON i.ExternalSubjectId = si.ExternalId
+WHERE i.Id = @DonorImputationId
+
+-- select original MV4 search results
+SELECT lmd.*
+FROM LocusMatchDetails lmd
+JOIN MatchedDonors md
+ON lmd.MatchedDonor_Id = md.Id
+JOIN SearchRequests sr
+ON md.SearchRequestRecord_Id = sr.Id
+JOIN SubjectInfo p
+ON sr.PatientId = p.Id
+WHERE md.DonorCode = @DonorId AND p.ExternalId = @PatientId
+
+SELECT ISNULL(mp.Locus,'') as Locus, MismatchCount, Probability, ProbabilityAsPercentage
+FROM MatchProbabilities mp
+JOIN MatchedDonors md
+ON mp.MatchedDonor_Id = md.Id
+JOIN SearchRequests sr
+ON md.SearchRequestRecord_Id = sr.Id
+JOIN SubjectInfo p
+ON sr.PatientId = p.Id
+WHERE md.DonorCode = @DonorId AND p.ExternalId = @PatientId
+ORDER BY LOCUS, MismatchCount
+
+-- select distinct genotypes for patient
+SELECT DISTINCT
+	Patient_A_1, Patient_A_2,
+	Patient_B_1, Patient_B_2,
+	Patient_C_1, Patient_C_2,
+	Patient_DQB1_1, Patient_DQB1_2,
+	Patient_DRB1_1, Patient_DRB1_2,
+	Patient_Likelihood
+FROM MatchingGenotypes mg
+JOIN ImputationSummaries i
+ON mg.Patient_ImputationSummary_Id = i.Id
+WHERE i.Id = @PatientImputationId
+
+-- select distinct genotypes for donors
+SELECT DISTINCT
+	Donor_A_1, Donor_A_2,
+	Donor_B_1, Donor_B_2,
+	Donor_C_1, Donor_C_2,
+	Donor_DQB1_1, Donor_DQB1_2,
+	Donor_DRB1_1, Donor_DRB1_2,
+	Donor_Likelihood
+FROM MatchingGenotypes mg
+JOIN ImputationSummaries i
+ON mg.Donor_ImputationSummary_Id = i.Id
+WHERE i.Id = @DonorImputationId
+
+-- select matching genotypes
+SELECT mg.*
+FROM MatchingGenotypes mg
+JOIN ImputationSummaries p
+ON mg.Patient_ImputationSummary_Id = p.Id
+JOIN ImputationSummaries d
+ON mg.Donor_ImputationSummary_Id = d.Id
+WHERE p.Id = @PatientImputationId and d.Id = @DonorImputationId
+ORDER BY mg.TotalCount DESC, mg.Patient_Likelihood*mg.Donor_Likelihood DESC