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README.md

RJMCMC : Nucleosome Positioning

Build Status codecov.io

Beware that an optimized version of RJMCMC, using R with an optimized section in C++, is now available: RJMCMCNucleosomes

This package uses informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.

Citing

If you use this package for a publication, we would ask you to cite the following:

Samb R, Khadraoui K, Belleau P, et al. (2015). "Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling." Statistical Applications in Genetics and Molecular Biology. Volume 14, Issue 6, Pages 517-532, ISSN (Online) 1544-6115, ISSN (Print) 2194-6302, December 2015, doi: 10.1515/sagmb-2014-0098

Authors

Rawane Samb, Khader Khadraoui, Pascal Belleau, Astrid Deschênes, Lajmi Lakhal-Chaieb and Arnaud Droit.

See Arnaud Droit Lab website.

License

This package and the underlying RJMCMC code are distributed under the Artistic license 2.0. You are free to use and redistribute this software.

For more information on Artistic 2.0 License see http://opensource.org/licenses/Artistic-2.0

Maintainer

Astrid Deschênes

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