Genome-Wide Nucleosome Positioning using High-Throughput Short-Read Data (MNase-Seq)
This package uses informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.
This package is in R with an optimized section in C++.
If you use this package for a publication, we would ask you to cite the following:
Samb R, Khadraoui K, Belleau P, et al. (2015). "Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling." Statistical Applications in Genetics and Molecular Biology. Volume 14, Issue 6, Pages 517-532, ISSN (Online) 1544-6115, ISSN (Print) 2194-6302, December 2015, doi: 10.1515/sagmb-2014-0098
To use this current RJMCMCNucleosomes version, the use of the Rcpp package is mandatory. This implies having GSL library installed.
See AD Lab website.
This package and the underlying RJMCMCNucleosomes code are distributed under the Artistic license 2.0. You are free to use and redistribute this software.
For more information on Artistic 2.0 License see http://opensource.org/licenses/Artistic-2.0
If you have any bugs or feature requests, let us know.