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Dev #229

Merged
merged 25 commits into from
Feb 5, 2024
Merged

Dev #229

merged 25 commits into from
Feb 5, 2024

Commits on Nov 29, 2023

  1. Enable thumbnails to download when some are missing #215 

    * Thumbnail downloads trigger `req_perform` sequence with error handling
* `collect_media` provides message of number of failed files to download too
    @daxkellie
    daxkellie committed Nov 29, 2023
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  2. Parse apostrophes correctly using %in% & galah_filter() #214

    @daxkellie
    daxkellie committed Nov 29, 2023
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Commits on Dec 15, 2023

  1. Query errors early when no taxa search terms are matched #219

    @daxkellie
    daxkellie committed Dec 15, 2023
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Commits on Dec 21, 2023

  1. Fix facet limit for show_values() #222

    @daxkellie
    daxkellie committed Dec 21, 2023
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Commits on Dec 22, 2023

  1. Increase internal limit of atlas_counts() #198 

    * Limit increased from 30 to 10,000
* Add message when limit is hit
    @daxkellie
    daxkellie committed Dec 22, 2023
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Commits on Jan 12, 2024

  1. Rename column to species_list_uid in search_all(lists) #225

    @daxkellie
    daxkellie committed Jan 12, 2024
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Commits on Jan 23, 2024

  1. First pass at rewiring collapse() as per issue #217 

    - move evaluation of lazy data and metadata APIs to `parse_` prefix
- add new class `evaluated_query()` to distinguish between outputs from `collapse()` and `compute()`
    @mjwestgate
    mjwestgate committed Jan 23, 2024
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Commits on Jan 24, 2024

  1. update tests for atlas_counts() 

    - update to remove tests for `query_set`
- add test for #198
    @mjwestgate
    mjwestgate committed Jan 24, 2024
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  2. Add test systems documentation

    @daxkellie
    daxkellie committed Jan 24, 2024
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Commits on Jan 30, 2024

  1. change object name returned by compute to computed_query

    @mjwestgate
    mjwestgate committed Jan 30, 2024
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Commits on Jan 31, 2024

  1. fix bugs when passing thumbnail or mint_doi to collect() 

    These affected downloads of images or occurrences. Tests updated to new `collapse()` syntax for these functions also.
    @mjwestgate
    mjwestgate committed Jan 31, 2024
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  2. update remaining tests to new collapse() behaviour

    @mjwestgate
    mjwestgate committed Jan 31, 2024
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Commits on Feb 1, 2024

  1. clean up tests relating to #225

    @mjwestgate
    mjwestgate committed Feb 1, 2024
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  2. clean up tests 

    - add `req_timeout` to non-download queries in `query_API()`
- try to prevent `parse_lists()` requesting number of lists until as late as possible
- misc test updates
    @mjwestgate
    mjwestgate committed Feb 1, 2024
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  3. Add try() and skip_if() to tests for International Atlases to avo… 

    …id breaking tests when API down

Started with Austria; other atlases to follow
    @mjwestgate
    mjwestgate committed Feb 1, 2024
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Commits on Feb 2, 2024

  1. update international tests to skip before failing if API is down

    @mjwestgate
    mjwestgate committed Feb 2, 2024
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  2. update object-oriented programming vignette to new behavior

    @mjwestgate
    mjwestgate committed Feb 2, 2024
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  3. update to version 2.0-1; add content to NEWS 

    + fix old terminology in help for `collapse()`
+ fix minor bugs found by `check()`
    @mjwestgate
    mjwestgate committed Feb 2, 2024
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  4. undo mistaken commit of commented out code

    @mjwestgate
    mjwestgate committed Feb 2, 2024
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  5. Merge pull request #228 from AtlasOfLivingAustralia/dev-collapse-testing 

    Dev collapse testing
    @mjwestgate
    mjwestgate committed Feb 2, 2024
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  6. fix bug in atlas_species() 

    required metadata were not appended to the `query` during `collapse()`, meaning error messages were being triggered unnecessrily
    @mjwestgate
    mjwestgate committed Feb 2, 2024
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Commits on Feb 5, 2024

  1. add missing skip_if_offline() to tests that only use collapse() 

    Not previously important, but matters now that `collapse()` behaviour is changed
    @mjwestgate
    mjwestgate committed Feb 5, 2024
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  2. remove problem links identified by win-builder 

    - labs post in `spatial_filtering` was out of date
- DCCEEW link didn't always resolve in time and was removed
    @mjwestgate
    mjwestgate committed Feb 5, 2024
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  3. use standard R version numbering

    @mjwestgate
    mjwestgate committed Feb 5, 2024
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  4. Merge branch 'main' into dev

    @mjwestgate
    mjwestgate committed Feb 5, 2024
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