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make executable
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miguelpmachado committed Sep 25, 2018
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -645,7 +645,7 @@ To construct stx subtypes Blast DB, proceed as described [here](#assemblies):
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An updated stx subtyping reference sequences can be obtained from [VirulenceFinder DB Bitbucket account](https://bitbucket.org/genomicepidemiology/virulencefinder_db). A specific script was created to get the most recent stx reference sequences.
An updated stx subtyping reference sequences can be obtained from [VirulenceFinder DB Bitbucket account](https://bitbucket.org/genomicepidemiology/virulencefinder_db). A specific script was created to get the most recent stx reference sequences and can be found inside _modules_ directory.
```
usage: get_stx_db.py [-h] [--version]
[-o /path/to/output/directory/]
Expand All @@ -667,7 +667,7 @@ Usage example
# Activate Conda environment (when using Python via Conda environment)
source activate seq_typing

get_stx_db.py --outdir /path/output/directory/
modules/get_stx_db.py --outdir /path/output/directory/
```

## Outputs
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