[BALL] Fix Python bindings for UnaryProcessor derivatives

Many sip classes have used incorrect base classes, preventing the BALLCore
module from being built with sip 4.19+ (partially fixes #606).

include/BALL/PYTHON/pyUnaryProcessors.h

@@ -0,0 +1,20 @@
+#ifndef BALL_PYTHON_PYPROCESSOR_H
+#define BALL_PYTHON_PYPROCESSOR_H
+
+#include <BALL/KERNEL/atomContainer.h>
+
+namespace BALL
+{
+	using AtomContainerProcessor = UnaryProcessor<AtomContainer>;
+	using AtomProcessor = UnaryProcessor<Atom>;
+	using BondProcessor = UnaryProcessor<Bond>;
+	using ChainProcessor = UnaryProcessor<Chain>;
+	using CompositeProcessor = UnaryProcessor<Composite>;
+	using FragmentProcessor = UnaryProcessor<Fragment>;
+	using ResidueProcessor = UnaryProcessor<Residue>;
+
+	using ConstAtomProcessor = ConstUnaryProcessor<Atom>;
+	using ConstCompositeProcessor = ConstUnaryProcessor<Composite>;
+}
+
+#endif //BALL_PYTHON_PYPROCESSOR_H

source/PYTHON/EXTENSIONS/BALL/BALLCore.sip

@@ -253,13 +253,7 @@
 %Include extractors.sip
 %Include pyIndexList.sip // a list of numbers (indices etc.)
 %Include pyAtomDict.sip // a dictionary mapping to atoms
-%Include pyAtomProcessor.sip 
-%Include pyBondProcessor.sip
-%Include pyFragmentProcessor.sip
-%Include pyResidueProcessor.sip
-%Include pyCompositeProcessor.sip
-%Include pyChainProcessor.sip
-//%Include pyLists.sip
+%Include pyUnaryProcessors.sip 
 
 // QSAR
 //%Include descriptor.sip

source/PYTHON/EXTENSIONS/BALL/addHydrogenProcessor.sip

@@ -1,6 +1,7 @@
 class AddHydrogenProcessor : CompositeProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/addHydrogenProcessor.h>
 	using namespace BALL;
 %End

source/PYTHON/EXTENSIONS/BALL/aromaticityProcessor.sip

@@ -6,17 +6,16 @@
 %ModuleCode
 	#include <BALL/QSAR/aromaticityProcessor.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Composite> CompositeProcessor;
 %End
 
 class AromaticityProcessor
-	:	CompositeProcessor
+	:	AtomContainerProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/QSAR/aromaticityProcessor.h>
 	using namespace BALL;
 	using namespace BALL::Exception;
-	typedef UnaryProcessor<Composite> CompositeProcessor;
 %End
 
 	public:

source/PYTHON/EXTENSIONS/BALL/assignBondOrderProcessor.sip

@@ -5,19 +5,18 @@
 %ModuleCode
 	#include <BALL/STRUCTURE/assignBondOrderProcessor.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Composite> CompositeProcessor;
 %End
 
 
 
 class AssignBondOrderProcessor 
-	: CompositeProcessor
+	: AtomContainerProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/assignBondOrderProcessor.h>
 	using namespace BALL;
 	using namespace BALL::Exception;
-	typedef UnaryProcessor<Composite> CompositeProcessor;
 %End
 
 	public:

source/PYTHON/EXTENSIONS/BALL/connectedComponentsProcessor.sip

@@ -7,23 +7,17 @@
 %ModuleCode
 	#include <BALL/STRUCTURE/connectedComponentsProcessor.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Composite> CompositeProcessor;
 %End
 
-
-
 class ConnectedComponentsProcessor 
-	: CompositeProcessor
+	: AtomContainerProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/connectedComponentsProcessor.h>
 	using namespace std;
 	using namespace BALL;
 	using namespace BALL::Exception;
-	typedef UnaryProcessor<Composite> CompositeProcessor;	
-
-	//typedef vector<Atom*>      Component;
-	//typedef	vector<Component>	ComponentVector;
 %End
 
 	public:

source/PYTHON/EXTENSIONS/BALL/geometricProperties.sip

@@ -5,13 +5,12 @@
 //
 
 class BoundingBoxProcessor
-//  : public UnaryProcessor<Atom>
-	: AtomProcessor
+	: ConstAtomProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/geometricProperties.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Atom> AtomProcessor;
 %End
   public:
   virtual bool start() throw();
@@ -26,13 +25,12 @@ class BoundingBoxProcessor
 };
 
 class GeometricCenterProcessor
-//	:	public UnaryProcessor<Atom> 
-	: AtomProcessor
+	: ConstAtomProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/geometricProperties.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Atom> AtomProcessor;
 %End
   public:
   virtual bool start() throw();
@@ -45,13 +43,12 @@ class GeometricCenterProcessor
 };
 
 class FragmentDistanceCollector
-//  : public UnaryProcessor<Composite> 
-	: CompositeProcessor
+	: ConstCompositeProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/geometricProperties.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Composite> CompositeProcessor;
 %End
   public:
   FragmentDistanceCollector();

source/PYTHON/EXTENSIONS/BALL/geometricTransformations.sip

@@ -5,13 +5,12 @@
 //
 
 class TranslationProcessor
-//  : public UnaryProcessor<Atom> 
 	: AtomProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/geometricTransformations.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Atom> AtomProcessor;
 %End
   public:
   TranslationProcessor();
@@ -25,13 +24,12 @@ class TranslationProcessor
 };
 
 class TransformationProcessor
-//  :public UnaryProcessor<Atom> 
 	: AtomProcessor
 {
 %TypeHeaderCode
+	#include <BALL/PYTHON/pyUnaryProcessors.h>
 	#include <BALL/STRUCTURE/geometricTransformations.h>
 	using namespace BALL;
-	typedef UnaryProcessor<Atom> AtomProcessor;
 %End
   public:
   TransformationProcessor();