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add merqury
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sujaikumar committed Jul 26, 2023
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Expand Up @@ -14,6 +14,7 @@ The list of sessions planned so far is given below. We are currently in the proc
| Assembling Mitogenomes from PacBio HiFi reads using [MitoHifi](https://github.com/marcelauliano/MitoHiFi){:target="_blank"} | Marcela Uliano-Silva |
| [BUSCO](https://busco.ezlab.org/){:target="_blank"} - from QC to gene prediction and phylogenomics | Rob Waterhouse |
| Assembling Genomes with the [VGP-Galaxy Pipeline](https://training.galaxyproject.org/training-material/topics/assembly/tutorials/vgp_genome_assembly/tutorial.html){:target="_blank"} | Delphine Lariviere |
| Assess genome assemblies with [Merqury](https://github.com/marbl/merqury){:target="_blank"} | Arang Rhie |
| Curating genomes using [TreeVal](https://github.com/sanger-tol/treeval){:target="_blank"} | Genome Reference Informatics Team |
| Checking for cobionts in public genomes using [BlobToolKit](https://blobtoolkit.genomehubs.org/view){:target="_blank"} | Sujai Kumar |
| Visualising genome assembly cobionts by running [BlobToolKit](https://blobtoolkit.genomehubs.org/view){:target="_blank"} locally | Sujai Kumar |
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| Using Bandage to explore assembly graphs |
| Genefinding with BRAKER3 |
| Verkko: telomere-to-telomere assembly of diploid chromosomes |
| Using Merqury to assess assemblies |
| Using OrthoFinder to find orthologs across genomes |
| Aligning whole genomes using Cactus |
| Using the Telomere Identification toolKit (tidk) |
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