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This commit updates CellLocator and Slicer adding support for flags `--lims-specimen-id` and `--lims-base-url`. If `--lims-specimen-id` is provided, it is used: * At application startup time to (1) retrieve the corresponding annotation from LIMS and load it by using the `/specimen_metadata/view` endpoint. (2) enable the "Upload Annotation" button * After user initiate annotation upload to LIMS while using the `/specimen_metadata/store` endpoint. The "kind" parameter for both endpoints `/specimen_metadata/view` and `/specimen_metadata/store` is set to "IVSCC cell locations" IVSCC expected cell count is currently unsupported. For testing this functionality, a mock server as been implemented. Relevant instructions are available here: https://github.com/KitwareMedical/AllenInstituteMockLIMS List of Slicer changes: $ git shortlog 0661948e5..9b00dc521f --no-merges David Allemang (1): [cell-locator] ENH: Add command line args --lims-specimen-id and --lims-base-url for LIMS integration.
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