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DWIConvert error when trying to convert DICOM to NRRD #57
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I'd be glad to have a look at the problem if I can get access to the dataset. Can you anonymize it and upload it? If I had to guess, I'd say it was missing DICOM tags that are needed to extract the gradient vectors. Are you trying to convert a non-DWI Dicom Series? Slicer has other DICOM plugins that can do that. |
1020_DICOMS.tar.gzhttps://docs.google.com/a/kitware.com/file/d/0B-1wLMrsF8gnUElxalRHejdTMFU/edit?usp=drive_web Here we'are ! To be honest I do not know very much, I just sit in Kitware as an intern Thank you for your time, Felix. On Wed, Jul 17, 2013 at 4:53 PM, Kent Williams notifications@github.comwrote:
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That DICOM series is missing the tags needed to identify the vendor, without which DWIConvert will not work. It is also not a DWI (Diffusion Weighted Imaging) series which DWIConvert is meant to convert. |
Ok, I was misled by the old module name. Could you advise me a module? Thanks a lot. |
After further testing I think I have a solution for you.
Unfortunately for you, this is a 'some assembly required' thing: The version of DWIConvert that comes in the Slicer package won't help you. |
I think that this has been resolved on the BRAINSia builds. We can not integrate with Slicer until after the RSNA conference in late November. |
Hello,
I'm currently trying to convert a DICOM directory into a NRRD file trough your slicer plugin DWIConvert.
When I run the command line:
./DWIConvert --inputDicomDirectory /home/felix/Downloads/1020_DICOMS --outputDirectory /home/felix/Downloads/Test --outputVolume test.nrrd
I have the following report:
terminate called without an active exception
Aborted (core dumped)
I am using the latest version of Slicer.
Thanks,
Felix
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