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BUG: add multishell and zSpace md5 test case files #341

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Mar 8, 2017
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33 changes: 28 additions & 5 deletions DWIConvert/TestSuite/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,11 @@
set(DWITarDir ${TestData_DIR}/DWI_TestData_TARBALLS)

#make sure: tarballs are stored in /scratch/hxie1/Projects/BrainsToolsBuild/ExternalData/TestData/DWI_TestData_TARBALLS/
# 1 upload testcase file into BRAINSTools/Public/ in http://slicer.kitware.com;
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Good comments.

# 2 download the key file(MD5);
# 3 put the MD5 file into /Volumes/scratch/hxie1/Projects/BRAINSTools/TestData/DWI_TestData_TARBALLS;
# 4 rerun CCMake, then Ctest will automatically find it and download it

set(ALL_DICOM_TARBALLS
${DWITarDir}/DWIConvertGeSignaHdxBMatrixTest.tar.gz
${DWITarDir}/DWIConvertGeSignaHdxBigEndianTest.tar.gz
Expand Down Expand Up @@ -44,8 +49,9 @@ ${DWITarDir}/SiemensTrioTim2.tar.gz
${DWITarDir}/SiemensTrioTim3.tar.gz
${DWITarDir}/SiemensTrioTimBigEndian1.tar.gz
${DWITarDir}/SiemensVerio.tar.gz
#${DWITarDir}/DWIConvertMultiShellFSITest.tar.gz
#${DWITarDir}/SpaceThicknessDiffDicom.tar.gz
${DWITarDir}/DWIConvertMultiShellFSITestSmallSize.tar.gz
${DWITarDir}/SpaceThicknessDiffDicom.tar.gz
#${DWITarDir}/DWIConvertMultiShellFSITest.tar.gz (for 640M big file)
)

# accumulator for test names that actually force
Expand Down Expand Up @@ -429,7 +435,7 @@ ExternalData_Add_Test( ${PROJECT_NAME}FetchData NAME DWIConvertSiemensTrio_Syngo
)
AddDataDependency(DWIConvertSiemensTrio_Syngo2004A_2Test)

# add a ctest case supporting multi-shell FSL data by Hui Xie on Jan 28th, 2017
# multi-shell FSL data for 640M big file
# the blank space between "ExternalData_Add_Test( " and "${PROJECT_NAME}FetchData NAME" below is critical.
#[[ExternalData_Add_Test( ${PROJECT_NAME}FetchData NAME DWIConvertMultiShellFSITest
COMMAND ${CMAKE_COMMAND}
Expand All @@ -447,14 +453,31 @@ AddDataDependency(DWIConvertSiemensTrio_Syngo2004A_2Test)
AddDataDependency(DWIConvertMultiShellFSITest)]]

# add a cest case supporting thicknes and zSpace of Dicom file are different on Feb 28th, 2017
#[[ExternalData_Add_Test( ${PROJECT_NAME}FetchData NAME SpaceThicknessDiffDicom
ExternalData_Add_Test( ${PROJECT_NAME}FetchData NAME SpaceThicknessDiffDicom
COMMAND ${CMAKE_COMMAND}
-D TEST_PROGRAM=$<TARGET_FILE:DWIConvert>
-D INPUTDICOMDIRECTORY=${DWIConvert_BINARY_DIR}/SpaceThicknessDiffDicom/
-D OUTPUTVOLUME=${DWIConvert_BINARY_DIR}/SpaceThicknessDiffDicom.nhdr
-D KEYVALUE_COMPARE_PROGRAM=$<TARGET_FILE:checkTagValueInHeader>
-P ${CMAKE_CURRENT_LIST_DIR}/ZspaceThicknessDiffDicom.cmake
)
AddDataDependency(SpaceThicknessDiffDicom)]]
AddDataDependency(SpaceThicknessDiffDicom)


# multishell data test for small size file
ExternalData_Add_Test( ${PROJECT_NAME}FetchData NAME DWIConvertMultiShellFSITestSmallSize
COMMAND ${CMAKE_COMMAND}
-D TEST_PROGRAM=$<TARGET_FILE:DWIConvert>
-D INPUTVOLUME=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize.nii.gz
-D INPUTBVECTOR=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize.bvec
-D INPUTBVALUE=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize.bval
-D OUTPUTVOLUME=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize_NrrdOutput.nhdr
-D RECOVERVOLUME=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize_Recover.nii
-D RECOVERBVECTOR=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize_Recover.bvec
-D RECOVERBVALUE=${DWIConvert_BINARY_DIR}/DWIConvertMultiShellFSITestSmallSize_Recover.bval
-D TEXT_COMPARE_PROGRAM=$<TARGET_FILE:FSLTextFileCompare>
-P ${CMAKE_CURRENT_LIST_DIR}/FSLMultiShellDataTest.cmake
)
AddDataDependency(DWIConvertMultiShellFSITestSmallSize)

ExternalData_Add_Target( ${PROJECT_NAME}FetchData ) # Name of data management target
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
1a637257ded9a5eacf7005a5bf389b2d
Original file line number Diff line number Diff line change
@@ -1 +1 @@
74e2fc277248dab7489393799cf0380f
74e2fc277248dab7489393799cf0380f