Put back stderr mocking (fails on Ubuntu)

Barski-lab · Oct 6, 2020 · fd11afb · fd11afb
1 parent db0a322
commit fd11afb
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/cwl_airflow/utilities/cwl.py b/cwl_airflow/utilities/cwl.py
@@ -420,13 +420,16 @@ def execute_workflow_step(
         location=workflow_step_path
     )
 
+    _stderr = sys.stderr                               # to trick the logger	
+    sys.stderr = sys.__stderr__
     step_outputs, step_status = executor(
         slow_cwl_load(
             workflow=workflow_step_path,
             cwl_args=default_cwl_args),
         job_data,
         RuntimeContext(default_cwl_args)
     )
+    sys.stderr = _stderr
 
     if step_status != "success":
         raise ValueError