Annie R Bice, Qingli Xiao, Justin Kong, Ping Yan, Zachary Pollack Rosenthal, Andrew W Kraft, Karen P Smith, Tadeusz Wieloch, Jin-Moo Lee, Joseph P Culver, Adam Q Bauer (2022) Homotopic contralesional excitation suppresses spontaneous circuit repair and global network reconnections following ischemic stroke eLife 11:e68852
Please make sure to add the repository folder to your MATLAB path. All scripts run on MATLAB 2021a.
Inputs:
- excelfile: Database file with list of mice/runs and the associated experiment parameters.
- rows: row number(s) within the excel file corresponding to the mice to be analyzed
Raw data needs to be in .tif format and the dimensions of the data need to be pixels(Y,X) x frames (ex. 128 x 128 x 1000). This processing code is also compatible with binary data.
Outputs:
- xform_datahb: contains information on the changes in concentrations of oxygenated and deoxygenated hemoglobin
xform_datahb( : , : , 1 , :) = change in concentration of oxygenated hemoglobin
xform_datahb( : , : , 2 , :) = change in concentration of deoxygenated hemoglobin
Please contact the Bauer lab if you have any questions: aqbauer@wustl.edu