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Write R Script #1

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BenKaehler opened this issue Oct 8, 2022 · 0 comments
Closed

Write R Script #1

BenKaehler opened this issue Oct 8, 2022 · 0 comments
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good first issue Good for newcomers

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@BenKaehler
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BenKaehler commented Oct 8, 2022 •
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Prerequisites:

  1. R programming.
  2. Understanding of SpiecEasi.
  3. Understanding of QIIME 2 FeatureTable[Frequency] type, and how to export into a format that can be imported into R.

Write an R script that loads a table exported from a FeatureTable[Frequency] type table and saves down an igraph when it has completed. It should expose the parameters of a normal call to SpiecEasi.

Example: https://github.com/qiime2/q2-dada2/blob/master/q2_dada2/assets/run_dada.R.
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