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Create Network semantic type #2

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BenKaehler opened this issue Oct 8, 2022 · 0 comments
Closed

Create Network semantic type #2

BenKaehler opened this issue Oct 8, 2022 · 0 comments

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@BenKaehler
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Dependencies: #1

Prerequisites:

  1. Python programming.
  2. Understanding of QIIME 2 semantic types and how to create new ones.

Create a Network QIIME 2 semantic type. It should provide transformers for reading and writing the igraph data structures saved be the R script.

Outdated example with lots of explanatory comments: https://github.com/qiime2-graveyard/q2-dummy-types/tree/master/q2_dummy_types.

Real-world working example: https://github.com/qiime2/q2-dada2/blob/master/q2_dada2/_stats.py and https://github.com/qiime2/q2-dada2/blob/master/q2_dada2/_transformer.py. Background: https://dev.qiime2.org/latest/storing-data/.

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