first cut at refactoring code so fastq parsing is divided into two pi…

…eces, one inside CS, one outside
BenLangmead · Mar 17, 2016 · d6d4a1d · d6d4a1d
1 parent 19af593
commit d6d4a1d
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Showing 6 changed files with 334 additions and 141 deletions.
diff --git a/filebuf.h b/filebuf.h
@@ -197,6 +197,7 @@ class FileBuf {
 					_buf_sz = _ins->gcount();
 				} else {
 					assert(_in != NULL);
+					// TODO: consider an _unlocked function
 					_buf_sz = fread(_buf, 1, BUF_SZ, _in);
 				}
 				_cur = 0;