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BernsteinLab

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  1. aml2019 aml2019 Public

    The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).

    R 36 11

  2. targetedNOMe_2022 targetedNOMe_2022 Public

    R 9

  3. Myeloid-Glioma Myeloid-Glioma Public

    Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments

    Jupyter Notebook 4

  4. BE_CD69_paper_2022 BE_CD69_paper_2022 Public

    Jupyter Notebook 2

  5. methods_mdm2_sarcoma methods_mdm2_sarcoma Public

    Bioinformatics pipelines developed at the Bernstein lab for the analyses of RNA-Seq, ChIP-Seq and hiChIP datasets in the article "Regulatory targets and impact of supraphysiologic MDM2 in sarcoma"

    R

  6. XRBS_wdl XRBS_wdl Public

    R

Repositories

Showing 9 of 9 repositories
  • Myeloid-Glioma Public

    Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments

    BernsteinLab/Myeloid-Glioma’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 0 0 0 Updated Sep 17, 2024
  • IDH_mutant_gliomas_progression_2024 Public
    BernsteinLab/IDH_mutant_gliomas_progression_2024’s past year of commit activity
    R 0 0 0 0 Updated Aug 28, 2024
  • targetedNOMe_2022 Public
    BernsteinLab/targetedNOMe_2022’s past year of commit activity
    R 9 0 1 0 Updated Jul 19, 2024
  • Calculate_Myeloid_cNMF_Usage Public

    This tool receives a normalized h5ad matrix of myeloid cells and calculates the usage of the consensus myeloid cNMF programs in gliomas by the cells in the uploaded h5ad matrix.

    BernsteinLab/Calculate_Myeloid_cNMF_Usage’s past year of commit activity
    Python 0 0 0 0 Updated Jun 3, 2024
  • BE_CD69_paper_2022 Public
    BernsteinLab/BE_CD69_paper_2022’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Dec 21, 2023
  • XRBS_wdl Public
    BernsteinLab/XRBS_wdl’s past year of commit activity
    R 0 0 0 0 Updated Jun 9, 2023
  • XRBS_SE Public
    BernsteinLab/XRBS_SE’s past year of commit activity
    R 0 0 0 0 Updated May 23, 2023
  • methods_mdm2_sarcoma Public

    Bioinformatics pipelines developed at the Bernstein lab for the analyses of RNA-Seq, ChIP-Seq and hiChIP datasets in the article "Regulatory targets and impact of supraphysiologic MDM2 in sarcoma"

    BernsteinLab/methods_mdm2_sarcoma’s past year of commit activity
    R 0 0 0 0 Updated Apr 10, 2023
  • aml2019 Public

    The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).

    BernsteinLab/aml2019’s past year of commit activity
    R 36 MIT 11 2 0 Updated Apr 8, 2020

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