Add container pandas:2.2.1. #3781
Workflow file for this run
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| name: Build image | |
| on: [push, pull_request] | |
| env: | |
| MULLED_NAMESPACE: biocontainers | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install python dependencies | |
| run: | | |
| #python -m pip install git+https://git@github.com/galaxyproject/galaxy.git@dev#subdirectory=packages/util | |
| #python -m pip install git+https://git@github.com/galaxyproject/galaxy.git@dev#subdirectory=packages/tool_util | |
| python -m pip install galaxy-tool-util | |
| - run: docker --version | |
| - run: docker info | |
| - name: Build images | |
| run: | | |
| mulled-build-files --check-published --singularity --namespace $MULLED_NAMESPACE --use-mamba build-and-test ./combinations --verbose | |
| - name: Upload images (if pushed to master branch) | |
| if: github.ref == 'refs/heads/master' && github.repository_owner == 'BioContainers' | |
| env: | |
| SSH_AUTH_SOCK: /tmp/ssh_agent.sock | |
| INVOLUCRO_AUTH: "https://${{ secrets.MY_USER }}:${{ secrets.MY_PASSWORD }}@quay.io/v1/?email=${{ secrets.MY_EMAIL }}" | |
| run: | | |
| mkdir -p ~/.ssh | |
| ssh-keyscan -t rsa depot.galaxyproject.org >> ~/.ssh/known_hosts | |
| ssh-agent -a $SSH_AUTH_SOCK > /dev/null | |
| ssh-add - <<< "${{ secrets.ORVAL_KEY }}" | |
| mulled-build-files --check-published --namespace $MULLED_NAMESPACE --oauth-token ${{ secrets.QUAY_OAUTH_TOKEN }} push ./combinations | |
| ls -l singularity_import | |
| [ "$(ls -A singularity_import)" ] && echo 'uploading Singularity images' && scp singularity_import/*:* singularity@depot.galaxyproject.org:/srv/nginx/depot.galaxyproject.org/root/singularity/ |