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ERROR: UndefVarError: FASTA not defined #152

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nurmians opened this issue Mar 15, 2021 · 1 comment
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ERROR: UndefVarError: FASTA not defined #152

nurmians opened this issue Mar 15, 2021 · 1 comment

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@nurmians
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nurmians commented Mar 15, 2021 •
edited by jakobnissen

julia> fst::BioSequences.FASTA.Reader
ERROR: UndefVarError: FASTA not defined

Ok... who broke this? I'm going back to Python, can't deal with this mess.
@jakobnissen
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jakobnissen commented Mar 15, 2021 •
edited

Dear @nurmians

Nothing is broken here. FASTA/FASTQ writers were removed from BioSequences for v2. To get FASTA functionality, install the package FASTX.

Edit: If you have scripts/workflows that depend on Julia packages, you should upper-bound the version of the Julia packages (or ideally, install explicit versions)

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@nurmians @jakobnissen