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Remove conversion to/from integers and kmers, and direct instantiatio… #147

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merged 2 commits into from
Mar 11, 2021

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…n of kmers from integers. See issue #145

Users should instead use masked(::Type{T}, x::Unsigned) to create kmers from integers, and reinterpret to create integers from kmers.

…n of kmers from integers.

Users should instead use `masked(::Type{T}, x::Unsigned)` to create kmers from integers, and `reinterpret` to create integers from kmers.
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codecov bot commented Mar 11, 2021

Codecov Report

Merging #147 (8016691) into v3 (40a6a59) will decrease coverage by 0.28%.
The diff coverage is 84.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##               v3     #147      +/-   ##
==========================================
- Coverage   83.24%   82.96%   -0.29%     
==========================================
  Files          40       40              
  Lines        2602     2594       -8     
==========================================
- Hits         2166     2152      -14     
- Misses        436      442       +6     
Flag Coverage Δ
unittests 82.96% <84.00%> (-0.29%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
src/BioSequences.jl 50.00% <ø> (ø)
src/mers/mer.jl 77.19% <63.63%> (-11.87%) ⬇️
src/geneticcode.jl 73.00% <100.00%> (ø)
src/iterators/eachmer.jl 82.40% <100.00%> (ø)
src/iterators/skipmerfactory.jl 85.04% <100.00%> (ø)
src/mers/conversion.jl 93.10% <100.00%> (-0.23%) ⬇️
src/mers/transformations.jl 94.11% <100.00%> (ø)

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@jakobnissen jakobnissen merged commit b506b4b into BioJulia:v3 Mar 11, 2021
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