-
Notifications
You must be signed in to change notification settings - Fork 53
220_Das_SingleCellRNASeq.Rmd #22
Comments
it looks like for a couple of workshops (including ours) the problem is that aroma.light is failing its checks in bioc-devel and hence biocLite won't be able to install it. Any workaround? Or should we ask @HenrikBengtsson to fix it? :) The workaround is to install https://cran.r-project.org/src/contrib/Archive/princurve/princurve_1.1-12.tar.gz or GitHub devel branch of princurve. The reason is Issue rcannood/princurve#8. |
Getting a new problem now that aroma.light is installed from
|
That: Error in project_to_curve(X, s, pcurve$ord, stretch = stretch) :
unused argument (pcurve$ord) appears to come from princurve. For troubleshooting purposes, see if it works with https://cran.r-project.org/src/contrib/Archive/princurve/princurve_1.1-12.tar.gz. BTW, what timeline are you on here? I can try to push for a CRAN update of princurve - they seem to be willing to make a new release quite soon. |
Hi Henrik,
|
Hey all, |
The problem with |
Thanks! |
And the problem with |
I can confirm that aroma.light passes |
|
kstreet/slingshot#19 was merged yesterday, but slingshot v 0.99.11 still needs to be published on Bioconductor. Once slingshot v 0.99.11 is out, this error should disappear :) |
Yeah, I pushed the new version yesterday, so it should be available soon! |
Hi @LiNk-NY , can you confirm that the new version of slingshot solves the issue above? It works on my local machine with slingshot 0.99.12 and princurve 2.1.0, but not sure which versions you have for the build. |
Hi Davide, @drisso
and it solves the issue. Thanks. |
Awesome! Thanks Marcel! |
Hi Diya, @diyadas
cc: @drisso @kstreet13 |
Will do! Have small formatting things I will also address. Thanks Marcel! |
I did fix the citation issue locally - but I'm unable to push commits. Any chance that someone could check the permissions I have? So sorry for the last-minute change. |
@diyadas, could you make a pull request with just that change? We have disabled commits on the repo for everyone, as the workflows are "live" now. Sorry for the inconvenience. |
PR submitted, sorry if you got a lot of notifications as I had an interesting time with GitHub. |
adding missing citations (closes #22) and minor formatting
I'm creating an issue for each workshop, to be closed when both 1) the workshop is complete, and 2) it compiles without problems. Please note problems and status updates here.
aroma.light issue, to be resolved on server side.
The text was updated successfully, but these errors were encountered: