-
Notifications
You must be signed in to change notification settings - Fork 33
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
CelliD #1845
Comments
Hi @Cortalak Thanks for submitting your package. We are taking a quick The DESCRIPTION file for this package is:
|
A reviewer has been assigned to your package. Learn what to expect IMPORTANT: Please read this documentation for setting Bioconductor utilized your github ssh-keys for git.bioconductor.org |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "ERROR, skipped". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: b80dcaf651bc21d638644c9415f2f3f15ae5b72c |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: b21b60044d13ff180d67b90bf688e3fb60f52f3a |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "ERROR, TIMEOUT". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: a19c2b2155a3915d50470130fad3a17b9ad5685c |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Hello @nturaga, I had my paper recently accepted for publication in a high impact peer-reviewed journal and we would like to include if possible the Bioconductor URL in the abstract rather than the github one. I was wondering if I had done all the required steps until the personalized review . Thank you very much. Best regards Akira |
Hi, During your package review, I realized I could not build your package on my machine locally. Please help me get past this error as it is not informative at all. Likely, other users will face the same issue.
|
Hello, Sorry, It seems that the billing for our google cloud bucket has expired since the last bioconductor build and the rds object cannot be accessed. Thank you for the feedback. |
You can submit such a data set as an ExperimentHub and use it from there.
https://bioconductor.org/packages/release/bioc/vignettes/ExperimentHub/inst/doc/CreateAnExperimentHubPackage.html
package
You don't have to store it on Google cloud and have the link expire.
ExperimentHub will give you a constant link that does not expire.
Best,
Nitesh
…On Tue, Feb 16, 2021 at 3:50 PM Cortalak ***@***.***> wrote:
Hello,
Sorry, It seems that the billing for our google cloud bucket has expired
since the last bioconductor build and the rds object cannot be accessed.
I will try to contact the admin to resolve the problem asap and will let
you know when it is done.
Thank you for the feedback.
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
<#1845 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AAU6QSZ76TW3FDOWU2VKCH3S7LLA7ANCNFSM4V5UEXJQ>
.
|
Hello, We have updated the payment for google cloud and the package should now build normally without any new commit. Best regards Akira |
Hello, I was just wondering if the package could now be built on your local machine. Did I do everything needed so that the review process can advance? Thanks Akira |
I'll take a look at it today.
…On Thu, Feb 25, 2021 at 5:14 AM Cortalak ***@***.***> wrote:
Hello,
I was just wondering if the package could now be built on your local
machine. Did I do everything needed so that the review process can advance?
Thanks
Akira
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
<#1845 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AAU6QSZC4NA6HO2Y7B4BRCLTAYPKDANCNFSM4V5UEXJQ>
.
|
Hello, I wanted to know if there is there is any advancement on the review process. Thanks Akira |
Hi, Sorry for the delay. I'll be posting a review today. |
R CMD buildok R CMD INSTALLok DESCRIPTIONok NAMESPACE
R
man
vignettes
General
|
Hello, Thank you a lot for the review for the data experiment package do I add the package inquiry here or do I open another issue? |
Hi, Have you made the changes to the code in the review? I'm happy to accept your package but you'll have to submit at data experiment package later on probably. I'm ok to allow this since you have a time crunch. |
Hello, Thank you very much for this exception, We're almost done with the rest of the changes, we will get back to you as soon as it is done. Akira |
Received a valid push on git.bioconductor.org; starting a build for commit id: aa8fb1c4dbe265885d772646aa7fbd3406dc1016 |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: 47ef3dda679a536f9c225181bc619d64d490fc4d |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
All functions that are exported must indeed be made available to the user.
Added informative message for stops
Added more extensive description for each functions especially for core functions such as RunMCA
replaced the old github installation process with the one with Biocmanager |
Hello, I made the changes to assess the different point of the review. However right now I fail at the build level when I push my changes. This is due to one of the core dependencies "Seurat" not installing properly due to their corrupted version 4.0.0. Shall I just wait a little bit more and retry to push or is there something else I can do? Thank you very much for your help Akira |
Received a valid push on git.bioconductor.org; starting a build for commit id: 1de76388d1d49bd7bd37bc362a97bffd1e552203 |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: 4baac8af3100e50d367de7ad60dd3e581c4845a2 |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: e437a1822a393ef965f27930a6a5def443d2f0bb |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
Hello, The package was finally able to build without error and now the code adresses the issues in the review apart from the experimenthub package. It should now be ready. Akira |
Hi, You have a new issue you have to fix now,
|
Received a valid push on git.bioconductor.org; starting a build for commit id: be6c96f19fa58610b29045d5c6d6a84fe4d1461b |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. This link will be active Remember: if you submitted your package after July 7th, 2020, |
The sapply have been changed to vapply in the last commit. |
Your package has been accepted. It will be added to the Thank you for contributing to Bioconductor! |
The master branch of your GitHub repository has been added to Bioconductor's git repository. To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/Cortalak.keys is not empty), then no further steps are required. Otherwise, do the following: See further instructions at https://bioconductor.org/developers/how-to/git/ for working with this repository. See especially https://bioconductor.org/developers/how-to/git/new-package-workflow/ to keep your GitHub and Bioconductor repositories in sync. Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at https://bioconductor.org/checkResults/ (Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using https://bioconductor.org/packages/CelliD If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further. |
Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor
Confirm the following by editing each check box to '[x]'
I understand that by submitting my package to Bioconductor,
the package source and all review commentary are visible to the
general public.
I have read the Bioconductor Package Submission
instructions. My package is consistent with the Bioconductor
Package Guidelines.
I understand that a minimum requirement for package acceptance
is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS.
Passing these checks does not result in automatic acceptance. The
package will then undergo a formal review and recommendations for
acceptance regarding other Bioconductor standards will be addressed.
My package addresses statistical or bioinformatic issues related
to the analysis and comprehension of high throughput genomic data.
I am committed to the long-term maintenance of my package. This
includes monitoring the support site for issues that users may
have, subscribing to the bioc-devel mailing list to stay aware
of developments in the Bioconductor community, responding promptly
to requests for updates from the Core team in response to changes in
R or underlying software.
I am familiar with the Bioconductor code of conduct and
agree to abide by it.
I am familiar with the essential aspects of Bioconductor software
management, including:
months, for bug fixes.
(optionally via GitHub).
For help with submitting your package, please subscribe and post questions
to the bioc-devel mailing list.
The text was updated successfully, but these errors were encountered: