RCM package

[sthawinke]

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the package you wish to submit to Bioconductor

• Repository: https://github.com/CenterForStatistics-UGent/RCM

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[bioc-issue-bot]

Hi @sthawinke

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: RCM
Type: Package
Title: Fit row-column association models with the negative binomial distribution for the microbiome
Version: 0.99.0
Author: Stijn Hawinkel <stijn.hawinkel@ugent.be>
Maintainer: Joris Meys <joris.meys@ugent.be>
Description: Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: RColorBrewer, alabama, edgeR, reshape2, tseries, vegan, VGAM, ggplot2 (>= 2.2.1.9000), nleqslv, phyloseq, tensor, MASS, stats, grDevices, graphics, methods
Suggests: 
    knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization
BugReports: https://github.com/CenterForStatistics-UGent/RCM/issues
URL: http://users.ugent.be/~shawinke/RCMmanual/

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[bioc-issue-bot]

A reviewer has been assigned to your package. Learn what to expect
during the review process.

IMPORTANT: Please read the instructions for setting
up a push hook on your repository, or further changes to your
repository will NOT trigger a new build.

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings
on all platforms.

Please see the build report for more details.

[JoFAM]

Tagging myself to follow the issue (I'm the maintainer)

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

2f19ca5 Version bump

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings
on all platforms.

Please see the build report for more details.

[vobencha]

Packages looks good and is approved. Nice job with the vignette and exported man pages.

Valerie

[bioc-issue-bot]

Your package has been accepted. It will be added to the
Bioconductor Git repository and nightly builds. Additional
information will be posed to this issue in the next several
days.

Thank you for contributing to Bioconductor!

[mtmorgan]

The master branch of your GitHub repository has been added to Bioconductor's git repository.

To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/sthawinke.keys is not empty), then no further steps are required. Otherwise, do the following:

1. Add an SSH key to your github account
2. Submit your SSH key to Bioconductor

See further instructions at

https://bioconductor.org/developers/how-to/git/

for working with this repository. See especially

https://bioconductor.org/developers/how-to/git/new-package-workflow/
https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

to keep your GitHub and Bioconductor repositories in sync.

Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at

https://bioconductor.org/checkResults/

(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install("RCM"). The package 'landing page' will be created at

https://bioconductor.org/packages/RCM

If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.

[vobencha]

Hi Joris, We need to create an account for the author so they can add/manage their own keys. Please send the github username for Stijn Hawinkel and I'll take care of this. Valerie

On 1/4/19 6:16 AM, Joris Meys wrote: @mtmorgan <https://github.com/mtmorgan> I am the maintainer of this package, and also the author/maintainer of the unifiedWMWqPCR package. So there's a key registered already for me ( see https://github.com/JoFAM.keys ). Is it necessary to also add a key for the author, or does one suffice? Cheers Joris Meys — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub <#949 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ACWhfR-TMCe9yw-IjxDiWoMDzlcyywEvks5u_2JEgaJpZM4ZGjIx>.

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