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@BioimageInformaticsTampere

Bioimage Informatics research group (Ruusuvuori lab)

Bioimage Informatics research group, University of Turku/Tampere University. PI: Pekka Ruusuvuori, Dr.Tech.

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  1. RegBenchmark RegBenchmark Public

    Benchmarking framework for 3D histology reconstruction algorithms

    MATLAB 6

  2. NucleiDetection NucleiDetection Public

    Supplementary material for article "Generalized fixation invariant nuclei detection through domain adaptation based deep learning" by Valkonen et al.

    Python 3

  3. domain-adaptation-cell-detection domain-adaptation-cell-detection Public

    Python 2

  4. DigitalPanCK DigitalPanCK Public

    Supplementary for article "Cytokeratin-supervised deep learning for automatic recognition of epithelial cells in breast cancers stained for ER, PR, and Ki-67" by Valkonen, Isola, Ylinen, Muhonen, S…

    2

  5. openslide-matlab openslide-matlab Public

    Forked from fordanic/openslide-matlab

    A MATLAB library providing bindings to the C library OpenSlide (https://github.com/openslide/openslide) used for reading whole-slide images.

    MATLAB 1

  6. CytoClassification CytoClassification Public

    Supplementary codes for Liimatainen, Huttunen, Latonen, Ruusuvuori, "Convolutional Neural Networks for Classification of Protein Localization Patterns"

    1

Repositories

Showing 7 of 7 repositories
  • NucleiDetection Public

    Supplementary material for article "Generalized fixation invariant nuclei detection through domain adaptation based deep learning" by Valkonen et al.

    BioimageInformaticsTampere/NucleiDetection’s past year of commit activity
    Python 3 GPL-3.0 0 1 (1 issue needs help) 0 Updated Dec 3, 2020
  • The-Virtual-Prostate Public
    BioimageInformaticsTampere/The-Virtual-Prostate’s past year of commit activity
    1 1 0 0 Updated Mar 26, 2020
  • DigitalPanCK Public

    Supplementary for article "Cytokeratin-supervised deep learning for automatic recognition of epithelial cells in breast cancers stained for ER, PR, and Ki-67" by Valkonen, Isola, Ylinen, Muhonen, Saxlin, Tolonen, Nykter, Ruusuvuori

    BioimageInformaticsTampere/DigitalPanCK’s past year of commit activity
    2 0 0 0 Updated Mar 20, 2019
  • domain-adaptation-cell-detection Public
    BioimageInformaticsTampere/domain-adaptation-cell-detection’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Mar 20, 2019
  • CytoClassification Public

    Supplementary codes for Liimatainen, Huttunen, Latonen, Ruusuvuori, "Convolutional Neural Networks for Classification of Protein Localization Patterns"

    BioimageInformaticsTampere/CytoClassification’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Dec 27, 2018
  • openslide-matlab Public Forked from fordanic/openslide-matlab

    A MATLAB library providing bindings to the C library OpenSlide (https://github.com/openslide/openslide) used for reading whole-slide images.

    BioimageInformaticsTampere/openslide-matlab’s past year of commit activity
    MATLAB 1 GPL-3.0 13 0 0 Updated Apr 12, 2018
  • RegBenchmark Public

    Benchmarking framework for 3D histology reconstruction algorithms

    BioimageInformaticsTampere/RegBenchmark’s past year of commit activity
    MATLAB 6 GPL-3.0 0 0 0 Updated Feb 16, 2018

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