Bitbol-Lab
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ProtMamba-ssm
ProtMamba-ssm PublicProtMamba: a homology-aware but alignment-free protein state space model
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Iterative_masking
Iterative_masking PublicIterative masking algorithm on MSA Transformer to generate synthetic sequences
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Phylogeny-MSA-Transformer
Phylogeny-MSA-Transformer PublicSupporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
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Repositories
- DrugRes_StructPop Public
Repository for "Spatial structure facilitates evolutionary rescue by cost-free drug resistance" (2024) by C. Fruet, E. L. Müller, C. Loverdo, and A.-F. Bitbol.
Bitbol-Lab/DrugRes_StructPop’s past year of commit activity - fitness-landscapes Public
Bitbol-Lab/fitness-landscapes’s past year of commit activity - Phylogeny-ESM2 Public
Monte-Carlo generation of synthetic multiple sequence alignments along phylogenetic trees using a protein language model
Bitbol-Lab/Phylogeny-ESM2’s past year of commit activity - ProtMamba-frozen-nips Public
Bitbol-Lab/ProtMamba-frozen-nips’s past year of commit activity - Phylogeny-sector-inference Public
Bitbol-Lab/Phylogeny-sector-inference’s past year of commit activity - Structured_pop Public
This repository provides the python code used to generate Figures in articles "Frequent asymmetric migrations suppress natural selection in spatially structured populations" , and "Mutant fate in spatially structured populations on graphs: connecting models to experiments" by A. Abbara, L. Pagani, C. García-Pareja, and A.-F. Bitbol.
Bitbol-Lab/Structured_pop’s past year of commit activity - Iterative_masking Public
Iterative masking algorithm on MSA Transformer to generate synthetic sequences
Bitbol-Lab/Iterative_masking’s past year of commit activity - Cooperation_structured_pop Public
Bitbol-Lab/Cooperation_structured_pop’s past year of commit activity
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