Build: Relax numpy max version

neurots/generate/orientations.py

@@ -352,7 +352,7 @@ def trunk_to_spherical_angles(trunk_angles, z_angles, phi_interval=None):
     z_angles = np.asarray(z_angles)
 
     n_angles = len(trunk_angles)
-    sorted_ids = np.argsort(trunk_angles)
+    sorted_ids = np.argsort(trunk_angles, kind="stable")
 
     sorted_phi_devs = trunk_angles[sorted_ids]
 
@@ -376,7 +376,7 @@ def trunk_absolute_orientation_to_spherical_angles(orientation, trunk_absolute_a
         tuple[numpy.ndarray[float], numpy.ndarray[float]]: The phi and theta angles.
     """
     # Sort angles
-    sort_ids = np.argsort(trunk_absolute_angles)
+    sort_ids = np.argsort(trunk_absolute_angles, kind="stable")
     sorted_phis = np.asarray(trunk_absolute_angles)[sort_ids]
     sorted_thetas = np.asarray(z_angles)[sort_ids]
 

neurots/generate/tree.py

@@ -197,12 +197,12 @@ def end(self):
     @staticmethod
     def order_per_process(secs):
         """Orders sections according to process type, major first."""
-        return np.copy(secs)[np.argsort([ss.process for ss in secs])]
+        return np.copy(secs)[np.argsort([ss.process for ss in secs], kind="stable")]
 
     @staticmethod
     def order_per_bif(secs):
         """Orders sections according to bifurcation times."""
-        ordered_list = np.argsort([ss.stop_criteria["TMD"].bif for ss in secs])
+        ordered_list = np.argsort([ss.stop_criteria["TMD"].bif for ss in secs], kind="stable")
         return np.copy(secs)[ordered_list]
 
     def append_section(self, section):

setup.py

@@ -25,7 +25,7 @@
     "matplotlib>=3.4",
     "morphio>=3.3.4,<4.0",
     "neurom>=3.0,<4.0",
-    "numpy>=1.22.0,<1.25.0",
+    "numpy>=1.22.0",
     "scipy>=1.6",
     "tmd>=2.3.0",
     "diameter-synthesis>=0.5.4",

tests/data/bio_path_persistence_diagram.json

@@ -1,30 +1,32 @@
-[[230.75389593157917, 174.56457422613303],
-[211.8444787719784, 121.25272218846463],
-[245.55485595950762, 109.70920446726689],
-[203.63182074610373, 89.25957467437232],
-[128.9362124173111, 118.5486705330162],
-[158.5662110052575, 138.94545937805032],
-[153.67408319151852, 102.27282442365426],
-[296.44626617610606, 263.46819264109564],
-[305.8307131313515, 260.42006340822644],
-[408.72723870264605, 255.65781252339656],
-[359.49069186274363, 223.32614801091603],
-[292.12931728901725, 227.31214513217506],
-[284.3482940368598, 217.61187240457087],
-[948.0461094340942, 844.4180688487629],
-[949.9041014387518, 789.6730105949981],
-[875.1368893136628, 826.9883630591214],
-[918.8558048173512, 838.300934909797],
-[904.8466455322774, 882.465980613506],
-[201.3564166212771, 71.08798169651931],
-[198.25135130338018, 57.83075189486727],
-[110.0395273998807, 42.523245550794634],
-[331.4387095608543, 216.0867079733905],
-[304.19061536841144, 204.8810610706671],
-[894.8503677581632, 735.9890956878662],
-[924.8510019185916, 788.7230363015565],
-[907.7295889499369, 768.791430790255],
-[947.242394623486, 711.5265712738037],
-[412.61837150883343, 188.21024131774902],
-[289.12339091590064, 28.817750930786133],
-[1072.5500821184357, 0]]
+[
+  [230.7538954615593, 174.5645745396614],
+  [211.8444786965847, 121.25272232294083],
+  [245.5548558831215, 109.70920467376709],
+  [203.63182109594345, 89.25957471132278],
+  [128.93621239066124, 118.54867050051689],
+  [158.5662106871605, 138.94545936584473],
+  [153.67408365011215, 102.27282452583313],
+  [296.44626665115356, 263.4681931734085],
+  [305.8307135105133, 260.42006397247314],
+  [408.72723972797394, 255.65781301259995],
+  [359.4906919002533, 223.32614827156067],
+  [292.12931779026985, 227.31214529275894],
+  [284.3482937216759, 217.6118724346161],
+  [948.0461094975471, 844.4180682301521],
+  [949.9041011333466, 789.6730102300644],
+  [875.1368893384933, 826.9883634448051],
+  [918.8558051586151, 838.3009353876114],
+  [904.8466463387012, 882.4659812748432],
+  [201.35641717910767, 71.08798170089722],
+  [198.25135153532028, 57.830751836299896],
+  [110.03952720761299, 42.52324539422989],
+  [331.438709795475, 216.08670818805695],
+  [304.1906150877476, 204.8810611963272],
+  [894.8503682017326, 735.9890956878662],
+  [924.8510028421879, 788.7230367064476],
+  [907.7295889854431, 768.7914308309555],
+  [947.2423948049545, 711.5265712738037],
+  [412.6183721125126, 188.21024131774902],
+  [289.12339040637016, 28.817750930786133],
+  [1072.5500807762146, 0]
+]