Web: http://www.cbica.upenn.edu/sbia/ Email: sbia-software at uphs.upenn.edu

Copyright (c) 2012-2016 University of Pennsylvania. All rights reserved. See http://www.cbica.upenn.edu/sbia/software/license.html or COPYING file.

INTRODUCTION

MUSE is a Multi Atlas ROI Segmentation tool that uses the multi-atlas registration based approach along with intensity weighting to parcellate the given human brain into a set of 153 regions of anatomical interest.

DEPENDENCIES

• dramms/1.4.1
• ANTS/1.9.x
• mico/1.0.0
• afni/2008_07_18_1710/11_20_2009
• fsl/4.1.5

PACKAGE OVERVIEW

Source Package

• doc/MUSE_Software_Manual.pdf The all-inclusive software manual for MUSE.

• BasisProject.cmake Meta-data used by BASIS to configure the project.

• CMakeLists.txt Root CMake configuration file.

• config/ Package configuration files.

• data/ Auxiliary data required by the executables.

• doc/ Software documentation such as the software manual.

• src/ Source code files.

• test/ Implementation of software tests and corresponding data.

• AUTHORS.txt A list of the people who contributed to this software.

• COPYING.txt The copyright and license notices.

• INSTALL.txt Build and installation instructions.

• README.txt This readme file.

Binary Package

Please refer to the INSTALL file for details on where the built executables and libraries, the auxiliary data, and the documentation files are installed.

LICENSING

See http://www.cbica.upenn.edu/sbia/software/license.html or COPYING file.

INSTALLATION

See build and installation instructions given in the INSTALL file.

DOCUMENTATION

See the software manual for details on the software including a demonstration of how to apply the software tools provided by this package.

REFERENCES