Dockers created by CCBR to be used on DNAnexus (and SBG) in the following pipelines:
The docker images were pushed to dockerhub and are available here.
General convention followed in all Docker images:
- All docker images have the following folders:
/data2--> Default working directory
/opt2--> Tools/software installed inside the docker container goes here
- The suffix
2ensures that there is no conflict with the host
/optfolders, which is likely if the docker image is run as a "converted" singularity container on HPC systems.
- Original Dockerfile is copied into the docker image as
/opt2/Dockerfile. One can view this directly by running
docker run nciccbr/ccbr_xxx_yyy cat /opt2/Dockerfile
- All docker images are built using one of the following base images:
bitnami/minideb:jessie: Docker images built using this base image tend to have a smaller digital footprint.