Skip to content

CCBR/Dockers

master
Switch branches/tags
Code

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 
 
 
sbg
 
 
 
 
 
 
 
 
 
 

Dockers

Dockers created by CCBR to be used on DNAnexus (and SBG) in the following pipelines:

  • RNASeq
  • ChIPSeq
  • ExomeSeq

The docker images were pushed to dockerhub and are available here.

General convention followed in all Docker images:

  • All docker images have the following folders:
    • /data2 --> Default working directory
    • /opt2 --> Tools/software installed inside the docker container goes here
  • The suffix 2 ensures that there is no conflict with the host /data and /opt folders, which is likely if the docker image is run as a "converted" singularity container on HPC systems.
  • Original Dockerfile is copied into the docker image as /opt2/Dockerfile. One can view this directly by running

docker run nciccbr/ccbr_xxx_yyy cat /opt2/Dockerfile

  • All docker images are built using one of the following base images:
    • ubuntu:16.04
    • ubuntu:18.04
    • bitnami/minideb:jessie : Docker images built using this base image tend to have a smaller digital footprint.

About

A collection of Dockerfiles to facilitate reproducibility across computing environments.

Topics

Resources

Stars

Watchers

Forks

Packages

No packages published