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Merge pull request #341 from jlac/activeDev
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changed hg38 filter ExAC VCF
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@jlac
jlac committed Sep 5, 2018
2 parents 4f77404 + 1e34169 commit 1b52c7d
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions hg38.json
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Original file line number Diff line number Diff line change
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"MUTECTVARIANTS": "--dbsnp /fdb/GATK_resource_bundle/hg38bundle/dbsnp_138.hg38.vcf.gz --cosmic /data/CCBR_Pipeliner/db/PipeDB/lib/COSMIC_82_hg38.vcf.gz",
"VEPBUILD": "GRCh38",
"VEPSPECIES": "homo_sapiens",
"VEPFILTERVCF": "/data/CCBR_Pipeliner/db/PipeDB/lib/ExAC_nonTCGA.r1.sites.hg38.vep.vcf.gz",
"VEPFILTERVCF": "/data/CCBR_Pipeliner/db/PipeDB/lib/ExAC_nonTCGA.r0.3.1.sites.vep.GRCh38.vcf.gz",
"VEPGENOME": "/fdb/VEP/88/cache/GRCh38.fa",
"CANVASGENOME": "/data/CCBR_Pipeliner/db/PipeDB/lib/canvas_refs/GRCh38/WholeGenomeFasta",
"CANVASKMER": "/data/CCBR_Pipeliner/db/PipeDB/lib/canvas_refs/GRCh38/kmer.fa",
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"MUTECTVARIANTS": "--dbsnp /fdb/GATK_resource_bundle/hg38bundle/dbsnp_138.hg38.vcf.gz --cosmic /data/CCBR_Pipeliner/db/PipeDB/lib/COSMIC_82_hg38.vcf.gz",
"VEPBUILD": "GRCh38",
"VEPSPECIES": "homo_sapiens",
"VEPFILTERVCF": "/data/CCBR_Pipeliner/db/PipeDB/lib/ExAC_nonTCGA.r1.sites.hg38.vep.vcf.gz",
"VEPFILTERVCF": "/data/CCBR_Pipeliner/db/PipeDB/lib/ExAC_nonTCGA.r0.3.1.sites.vep.GRCh38.vcf.gz",
"VEPGENOME": "/fdb/VEP/88/cache/GRCh38.fa",
"CANVASGENOME": "/data/CCBR_Pipeliner/db/PipeDB/lib/canvas_refs/GRCh38/WholeGenomeFasta",
"CANVASKMER": "/data/CCBR_Pipeliner/db/PipeDB/lib/canvas_refs/GRCh38/kmer.fa",
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