tmp is actually temp

CCBR · Sep 6, 2019 · 1fd2ddc · 1fd2ddc
1 parent 6bd98fc
commit 1fd2ddc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Rules/initialqcrnaseq.snakefile b/Rules/initialqcrnaseq.snakefile
@@ -143,7 +143,7 @@ fastqc {input} -t {threads} -o {output};
       output: 
         out1=temp(join(workpath,trim_dir,"{name}.R1.trim.fastq.gz")),
         out2=temp(join(workpath,trim_dir,"{name}.R2.trim.fastq.gz")),
-        outdir=tmp(join(workpath,trim_dir))
+        outdir=temp(join(workpath,trim_dir))
       params: 
         rname='pl:trim_pe',
         batch='--cpus-per-task=32 --mem=110g --time=48:00:00',