'peakcall.tab' is copied over if it's in the data directory

gui/frame.py

@@ -623,6 +623,7 @@ def make_symlinks(self):
                 cmd="for f in `ls {0}*[._]{1}`;do ln -s $f {2};done".format(data,FT, self.workpath.get())
                 p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=STDOUT, close_fds=True)
                 Out = p.stdout.read()
+                print(pl)
                 if pl == 'ExomeSeq' or pl == 'GenomeSeq':
                     print("\n\nChecking for 'bams/' or 'gvcfs/' directories...")
                     if os.path.isdir(os.path.join(data,"bams")):
@@ -638,6 +639,11 @@ def make_symlinks(self):
                         cmd="for f in `ls {0}/*[._]vcf`;do ln -s $f {1};done".format(gvcfspath,self.workpath.get())
                         #print(cmd,"\n","Pipeline_name", pl,"\n" , "Data", data)
                         p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=STDOUT, close_fds=True)
+                elif pl == 'ChIPseq':
+                    if os.path.isfile(os.path.join(data, "peakcall.tab")):
+                        print("Found 'peakcall.tab': Symlinking file!")
+                        cmd="cp {0}peakcall.tab {1}".format(data, self.workpath.get())
+                        p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=STDOUT, close_fds=True)
 
         except Exception as e: 
             showerror("Error",str(e))