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Resolves #405, 'preseq lc_extrap' approximation
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skchronicles committed Feb 22, 2019
1 parent df316c9 commit b0d9933
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2 changes: 1 addition & 1 deletion Rules/InitialChIPseqQC.snakefile
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Expand Up @@ -811,7 +811,7 @@ rule NRF:
threads: 16
shell: """
module load {params.preseqver};
preseq lc_extrap -P -B -o {output.preseq} {input.bam} -seed 12345 -v -l 100000000000 2> {output.preseqlog}
preseq lc_extrap -P -B -D -o {output.preseq} {input.bam} -seed 12345 -v -l 100000000000 2> {output.preseqlog}
python {params.nrfscript} {output.preseqlog} > {output.nrf}
"""

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