pcacall.R revert

CCBR · Oct 12, 2018 · d908ec2 · d908ec2
1 parent f477753
commit d908ec2
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/Results-template/Scripts/pcacall.R b/Results-template/Scripts/pcacall.R
@@ -2,13 +2,14 @@
 ## grab args
 args <- commandArgs(trailingOnly = TRUE)
 DIR <- args[1]
+outHtml <- args[2]
 # Sys.setenv(RSTUDIO_PANDOC="/Applications/RStudio.app/Contents/MacOS/pandoc")
 setwd(DIR) # new 
-rmarkdown::render("PcaReport.Rmd", params = list(
+rmarkdown::render("PcaReport.Rmd",output_file=outHtml, params = list(
     folder = args[1],
-    sampleinfo = args[2],
-    data = args[3],
-    projectId = args[4],
-    projectDesc = args[5]
+    sampleinfo = args[3],
+    data = args[4],
+    projectId = args[5],
+    projectDesc = args[6]
   ))