update to mm9/mm10 json files... blacklist bwa index now includes chr…

…_rDNA as well
CCBR · Jul 23, 2019 · dfb9016 · dfb9016
1 parent 7600f40
commit dfb9016
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/mm10.json b/mm10.json
@@ -258,7 +258,7 @@
     "MUTECTSNP": ""
 },
         "ChIPseq":{
-            "BLACKLISTBWAINDEX":"/data/CCBR_Pipeliner/db/PipeDB/Indices/mm10_basic/indexes/mm10.blacklist.chrM",
+            "BLACKLISTBWAINDEX":"/data/CCBR_Pipeliner/db/PipeDB/Indices/mm10_basic/indexes/mm10.blacklist.chrM.chr_rDNA",
             "BWA": "/data/CCBR_Pipeliner/db/PipeDB/Indices/mm10_basic/indexes/mm10",
             "BOWTIE2INDEX": "/data/CCBR_Pipeliner/db/PipeDB/Indices/mm10_basic/indexes/mm10",
             "CHROMS": ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10",

diff --git a/mm9.json b/mm9.json
@@ -170,7 +170,7 @@
         "ChIPseq":{
             "BWA": "/data/CCBR_Pipeliner/db/PipeDB/Indices/mm9_basic/indexes/mm9",
             "BOWTIE2INDEX": "/data/CCBR_Pipeliner/db/PipeDB/Indices/mm9_basic/indexes/mm9",
-            "BLACKLISTBWAINDEX":"/data/CCBR_Pipeliner/db/PipeDB/Indices/mm9_basic/indexes/mm9.blacklist.chrM",
+            "BLACKLISTBWAINDEX":"/data/CCBR_Pipeliner/db/PipeDB/Indices/mm9_basic/indexes/mm9.blacklist.chrM.chr_rDNA",
             "CHROMS": ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10",
                        "chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19",
                        "chrX","chrY","chrM"],