Fix issue #47
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| name: CD | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| jobs: | |
| coverage: | |
| name: Deploy Coverage Results | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Check Python Version | |
| run: python --version | |
| - name: Install Package Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install git+https://github.com/cea-cosmic/modopt@develop # Workaround, to be removed | |
| python -m pip install -r develop.txt | |
| - name: Install PySAP | |
| run: python -m pip install . | |
| - name: Run Tests | |
| run: python -m pytest | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| flags: unittests | |
| api_deploy: | |
| name: Deploy API Documentation | |
| needs: coverage | |
| runs-on: self-hosted | |
| if: success() | |
| env: | |
| gh_root: https://github.com/CEA-COSMIC/ | |
| tag_path: /archive/refs/tags/ | |
| gh_download: https://codeload.github.com/CEA-COSMIC/ | |
| develop_path: /tar.gz/refs/heads/develop | |
| sphinx_opts: -t docs/_templates -feTMo docs/source | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10.12" | |
| - name: Check Python Version | |
| run: python --version | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pandoc | |
| python -m pip install -r docs/requirements.txt | |
| python -m pip install . | |
| - name: Download plug-ins | |
| run: | | |
| while read _plugin; do | |
| plugin_name="$(echo ${_plugin} | awk -F== '{print $1}')" | |
| plugin_version="$(echo ${_plugin} | awk -F== '{print $2}')" | |
| wget ${gh_download}${plugin_name}${develop_path} -O ${plugin_name}.tar.gz | |
| done < plugins.txt | |
| for file in *.tar.gz; do | |
| tar xzf "$file"; | |
| python -m pip install "$file" | |
| done | |
| rm *.tar.gz | |
| - name: Extract plug-in examples | |
| run: | | |
| while read _plugin; do | |
| plugin_name="$(echo ${_plugin} | awk -F== '{print $1}')" | |
| cp -r ${plugin_name}-*/examples examples/${plugin_name} || echo "Warning: no examples found for ${plugin_name}" | |
| done < plugins.txt | |
| - name: Build PySAP source files | |
| run: sphinx-apidoc ${sphinx_opts} pysap | |
| - name: Build plug-in source files | |
| run: | | |
| while read _plugin; do | |
| plugin_name="$(echo ${_plugin} | awk -F== '{print $1}')" | |
| package_name="$(echo ${plugin_name} | awk -F- '{print $2}')" | |
| sphinx-apidoc ${sphinx_opts} ${plugin_name}-*/${package_name} | |
| done < plugins.txt | |
| - name: Install GPU specific requirements | |
| run: | | |
| python -m pip install -r pysap-mri-*/gpu_requirements.txt | |
| - name: Build API documentation | |
| run: sphinx-build -E docs/source docs/_build | |
| - name: Deploy API documentation | |
| uses: peaceiris/actions-gh-pages@v3.5.9 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/_build |