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Ability to output consensus sequences based on quality metrics (i.e., breadth and depth of coverage)
enhancement
New feature or request
#64
opened Jan 26, 2024 by
Codes1985
[BUG]: pull is only supported for shub URIs
bug
Something isn't working
#63
opened Jan 26, 2024 by
virologist
1 task
[BUG]: Error executing process > 'NF_FLU:ILLUMINA:SUBTYPING_REPORT (1)'
bug
Something isn't working
#46
opened Sep 11, 2023 by
PierreLyons
1 task done
Illumina subworkflow read mapping/variant calling
enhancement
New feature or request
#4
opened Jun 9, 2022 by
peterk87
More robust handling and preprocessing of user input sequences
enhancement
New feature or request
#3
opened Jun 9, 2022 by
peterk87
Variant calling results should be used instead of BLAST to compare read mapping/variant calling consensus to reference sequences not necessary
enhancement
New feature or request
#2
opened Jun 9, 2022 by
peterk87
Add custom references FASTA for CI tests
enhancement
New feature or request
#1
opened Jun 9, 2022 by
peterk87
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