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Use CMakeLists.txt instead of Makefile #4

Merged
merged 41 commits into from
Jun 9, 2024
Merged

Use CMakeLists.txt instead of Makefile #4

merged 41 commits into from
Jun 9, 2024

Commits on Apr 24, 2024

  1. Use CMakeLists.txt instead of Makefile

    @adamant-pwn
    adamant-pwn committed Apr 24, 2024
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Commits on May 13, 2024

  1. Update CMakeLists.txt

    @adamant-pwn
    adamant-pwn committed May 13, 2024
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Commits on May 15, 2024

  1. Refactor CMakeLists.txt

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  2. Update

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  3. Use .a instead of .so, link pod5 with zstd

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  4. Fix docker failure

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  5. Update README.md

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  6. Update README.md

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  7. Add basic Dockerfile

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  8. Update Dockerfile

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  9. Make test workflow

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  10. Checkout recursive

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  11. Update branch name in workflow

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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  12. Redundant include <array>

    @adamant-pwn
    adamant-pwn committed May 15, 2024
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Commits on May 16, 2024

  1. Use -h in GH workflow

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  2. Run workflow for any PR

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  3. Remove python bindings WIP, add proper handling of C/CXX

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  4. Testing simplified RUCLIENT_ENABLED

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  5. Use TARGET_NAME as an argument

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  6. Try caching for workflows

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  7. Try NOHDF5=ON by default

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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  8. Try NOPOD5=ON

    @adamant-pwn
    adamant-pwn committed May 16, 2024
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Commits on May 17, 2024

  1. Update

    @adamant-pwn
    adamant-pwn committed May 17, 2024
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  2. Remove readuntil_fake

    @adamant-pwn
    adamant-pwn committed May 17, 2024
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  3. Remove log.txt

    @adamant-pwn
    adamant-pwn committed May 17, 2024
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  4. Try build with POD5 and HDF5

    @adamant-pwn
    adamant-pwn committed May 17, 2024
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Commits on May 24, 2024

  1. merged tflite branch and fixed cmake setup

    @maximilianmordig
    maximilianmordig committed May 24, 2024
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  2. adding some fixes to the cmake file, and prototyping python integration

    @maximilianmordig
    maximilianmordig committed May 24, 2024
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Commits on May 31, 2024

  1. Fix slow5lib.so

    @adamant-pwn
    adamant-pwn committed May 31, 2024
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Commits on Jun 3, 2024

  1. wrote crude wrapper around rawhash for signal mapping

    @maximilianmordig
    maximilianmordig committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. added option to skip querying revcomp signal, small fixes

    @maximilianmordig
    maximilianmordig committed Jun 4, 2024
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  2. confirmed that alignment is the same for a single read

    @maximilianmordig
    maximilianmordig committed Jun 4, 2024
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  3. cleaned up rawhash python wrapper

    @maximilianmordig
    maximilianmordig committed Jun 4, 2024
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Commits on Jun 5, 2024

  1. Try caching build directory

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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  2. Lowercase repo owner

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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  3. Use CACHE STRING on ccache

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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  4. Remove build from .dockerignore for caching

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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  5. Only run build-push-action once

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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  6. Try -j 2 with cached build directory

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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  7. Use 3 cores and only cache build dir

    @adamant-pwn
    adamant-pwn committed Jun 5, 2024
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Commits on Jun 6, 2024

  1. Try to use less space in workflows

    @adamant-pwn
    adamant-pwn committed Jun 6, 2024
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