SHIFTS v0.4.1

PeakModeller: Fix error when creating log file

SHIFTS v0.4.0

• SHIFTSadapter, DuplicateRemover, DMcalibrator, PeakModeller: The infile argument now accepts wildcards (*) in the input path.
• PeakSelector: The number of decimal places in the apex list can now be controlled with the decimal_places parameter.

SHIFTS v0.3.2

• Remove recom_mod_peptide_column param
• Bug fixes

SHIFTS v0.3.1

RECOMfilterer

• New corr_xcorr parameter to calculate corrected xcorr.
• Decoy prefixes can now be any length.
• Add RECOMfiltered MH and sequence to output.

PeakAssignator

• New recom_mod_peptide_column parameter (Name of column containing Recom sequence with deltamass in XXX[DM]XXX or XXXXXX_DM format).
• Assigned sequence now takes into account Recom mod. position if applicable.

PeakFDRer

• Separating PeakFDRer output according to the batch table is now optional.
• experiment_table command line option is now called batch.
• New BatchSeparator module.

SHIFTS-4 v0.3.0

• PeakModeller is significantly faster
• Decoy and Target score thresholds removed from RECOMfilterer
• PeakFDRer will warn about scans that don't belong to any group in the Experiments Table

SHIFTS-4 v0.2.0

• Added DuplicateRemover module
• Empty lines in PeakModeller input are now ignored
• New PeakFDRer parameter: peak_outlier_value (Peak_FDR value assigned to peak outliers)
• Misc. bug fixes

SHIFTS-4 v0.1.0

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