This tool is essentially glue between the SNVPhyl workflow and tbvcfreport. It
reads the variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF
files, using the COMBAT-TB eXplorer database for annotation. In the process
it computes the effect of variants on genes and proteins, thus the
including snptools.vcf module might be more broadly useful.
Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation
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COMBAT-TB/vcf_from_snvphyl
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Parses variant report from SNVPhyl and generates annotated (ala. SnpEff) VCF files, using COMBAT-TB eXplorer database for annotation
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