Merge branch 'master' into develop

Cargo.toml

@@ -26,9 +26,9 @@ categories = ["command-line-utilities", "science"]
 
 [dependencies]	
 # for release
-libradicl = "0.4.4" 
+# libradicl = "0.4.4" 
 # for local development
-# libradicl = { path = "libradicl", version = "0.4.4" }
+ libradicl = { path = "libradicl", version = "0.4.4" }
 arrayvec = "0.7.2"
 ahash = "0.7.6"
 bincode = "1.3.3"

libradicl/src/lib.rs

@@ -8,12 +8,12 @@
  */
 
 // scroll now, explore nom later
-extern crate needletail;
-extern crate num;
-extern crate quickersort;
-extern crate rust_htslib;
-extern crate sce;
-extern crate scroll;
+
+
+
+
+
+
 use crate as libradicl;
 
 use self::libradicl::rad_types::{CorrectedCbChunk, RadIntId, ReadRecord};

libradicl/src/schema.rs

@@ -7,8 +7,8 @@
  * License: 3-clause BSD, see https://opensource.org/licenses/BSD-3-Clause
  */
 
-extern crate bio_types;
-extern crate quickersort;
+use bio_types;
+
 
 #[allow(unused_imports)]
 use bio_types::strand::Strand;

src/main.rs

@@ -8,14 +8,6 @@
  */
 
 
-use chrono;
-
-
-use num_cpus;
-use rand;
-use slog;
-use slog_term;
-
 use bio_types::strand::Strand;
 use clap::{arg, crate_authors, crate_version, Command};
 use csv::Error as CSVError;