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rob-p committed Aug 4, 2020
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quant
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The ``quant'' command takes a collated RAD file and performs feature (e.g. gene) quantification, outputting
The ``quant`` command takes a collated RAD file and performs feature (e.g. gene) quantification, outputting
a sparse matrix of de-duplicated counts as well as a list of labels for the rows and columns. The ``quant``
command takes an input directory containing the collated RAD file, a transcript-to-gene map, an output directory
where the results will be written and a "resolution strategy" (described below). Quantification is
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