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Merge pull request #4 from Blahah/patch-1
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typo in quant --help-aligmments
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rob-p committed Jun 4, 2015
2 parents 3552ab0 + 3835eb5 commit b741abf
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/SalmonQuantifyAlignments.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -889,7 +889,7 @@ int salmonAlignmentQuantify(int argc, char* argv[]) {
"going to perform downstream analysis of the alignments with tools which don't, themselves, take "
"fragment assignment ambiguity into account, you should use this output.")
("sampleUnaligned,u", po::bool_switch(&sampleUnaligned)->default_value(false), "In addition to sampling the aligned reads, also write "
"the un-aligned reads to \"posSample.bam\".")
"the un-aligned reads to \"postSample.bam\".")
("useMassBanking", po::bool_switch(&(sopt.useMassBanking))->default_value(false), "[Deprecated] : "
"Use mass \"banking\" in subsequent epoch of inference. Rather than re-observing uniquely "
"mapped reads, simply remember the ratio of uniquely to ambiguously mapped reads for each "
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