Wait on experimental handling of orphaned reads in lightweight alignm…

…ent mode
COMBINE-lab · May 15, 2015 · c0c14d3 · c0c14d3
1 parent 26bb03a
commit c0c14d3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/SalmonQuantify.cpp b/src/SalmonQuantify.cpp
@@ -1380,7 +1380,7 @@ void getHitsForFragment(std::pair<header_sequence_qual, header_sequence_qual>& f
     uint32_t firstTranscriptID = std::numeric_limits<uint32_t>::max();
     double bestScore = -std::numeric_limits<double>::max();
     if (BOOST_UNLIKELY(isOrphan)) {
-        //return;
+        return;
         bool foundValidHit{false};
         // search for a hit on the left
         for (auto& tHitList : leftHits) {