R pipeline used to analyze mass cytometry data.
Written by Zachary Stensland
To use:
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Install CytoTree and dependencies for R: https://github.com/JhuangLab/CytoTree
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Download raw data files from database: https://data.mendeley.com/datasets/vp64jnn4k9/draft?a=20077a31-a752-4471-aa8e-fcfabef78703
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Download R script and edit path to direct to folder containing raw data files.
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It is highly recommended reading through the tutorial for CytoTree before starting analysis: https://ytdai.github.io/CytoTree/index.html