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CalebBell committed Apr 3, 2022
1 parent 2cd6a3a commit 4baf962
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118 changes: 117 additions & 1 deletion chemicals/virial.py
Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,9 @@
.. autofunction:: chemicals.virial.Z_from_virial_density_form
.. autofunction:: chemicals.virial.Z_from_virial_pressure_form
.. autofunction:: chemicals.virial.BVirial_mixture
.. autofunction:: chemicals.virial.dBVirial_mixture_dzs
.. autofunction:: chemicals.virial.d2BVirial_mixture_dzizjs
.. autofunction:: chemicals.virial.d3BVirial_mixture_dzizjzks
.. autofunction:: chemicals.virial.CVirial_mixture_Orentlicher_Prausnitz
.. autofunction:: chemicals.virial.dCVirial_mixture_dT_Orentlicher_Prausnitz
.. autofunction:: chemicals.virial.d2CVirial_mixture_dT2_Orentlicher_Prausnitz
Expand Down Expand Up @@ -86,6 +89,7 @@

__all__ = ['BVirial_Pitzer_Curl', 'BVirial_Abbott', 'BVirial_Tsonopoulos',
'BVirial_Tsonopoulos_extended',
'dBVirial_mixture_dzs', 'd2BVirial_mixture_dzizjs',
'BVirial_Xiang', 'BVirial_Xiang_vec', 'BVirial_Xiang_mat',
'BVirial_mixture',
'B_to_Z', 'B_from_Z', 'Z_from_virial_density_form',
Expand Down Expand Up @@ -379,9 +383,121 @@ def BVirial_mixture(zs, Bijs):
row = Bijs[i]
for j in range(N):
B_tmp += zs[j]*row[j]
B += zs[i]*B_tmp
B += zs[i]*(B_tmp)
return B

def dBVirial_mixture_dzs(zs, Bijs):
r'''Calculate first mole fraction derivative of the `B` second virial
coefficient from a matrix of virial cross-coefficients.
.. math::
\frac{\partial B}{\partial x_i} = \sum_j z_j(B_{i,j} + B_{j,i})
Parameters
----------
zs : list[float]
Mole fractions of each species, [-]
Bijs : list[list[float]]
Second virial coefficient in density form [m^3/mol]
Returns
-------
dB_dzs : list[float]
First mole fraction derivatives of second virial coefficient in
density form [m^3/mol]
Notes
-----
Examples
--------
>>> Bijs = [[-6.24e-06, -2.013e-05, -3.9e-05], [-2.01e-05, -4.391e-05, -6.46e-05], [-3.99e-05, -6.46e-05, -0.00012]]
>>> zs = [.5, .3, .2]
>>> dBVirial_mixture_dzs(zs=zs, Bijs=Bijs)
[-3.4089e-05, -7.2301e-05, -0.00012621]
'''
N = len(Bijs)
dB_dzs = [0.0]*N
for k in range(N):
dB = 0.0
for i in range(N):
dB += zs[i]*Bijs[i][k] + zs[i]*Bijs[k][i]
dB_dzs[k] = dB
return dB_dzs

def d2BVirial_mixture_dzizjs(zs, Bijs):
r'''Calculate second mole fraction derivative of the `B` second virial
coefficient from a matrix of virial cross-coefficients.
.. math::
\frac{\partial^2 B}{\partial x_i \partial x_j} = B_{i,j} + B_{j,i}
Parameters
----------
zs : list[float]
Mole fractions of each species, [-]
Bijs : list[list[float]]
Second virial coefficient in density form [m^3/mol]
Returns
-------
d2B_dzizjs : list[list[float]]
First mole fraction derivatives of second virial coefficient in
density form [m^3/mol]
Notes
-----
Examples
--------
>>> Bijs = [[-6.24e-06, -2.013e-05, -3.9e-05], [-2.01e-05, -4.391e-05, -6.46e-05], [-3.99e-05, -6.46e-05, -0.00012]]
>>> zs = [.5, .3, .2]
>>> d2BVirial_mixture_dzizjs(zs=zs, Bijs=Bijs)
[[-1.248e-05, -4.023e-05, -7.89e-05], [-4.023e-05, -8.782e-05, -0.0001292], [-7.89e-05, -0.0001292, -0.00024]]
'''
N = len(Bijs)
d2B_dzizjs = [[0.0]*N for _ in range(N)] # numba: delete
# d2B_dzizjs = zeros((N, N)) # numba: uncomment
for i in range(N):
for j in range(N):
d2B_dzizjs[i][j] = Bijs[i][j] + Bijs[j][i]
return d2B_dzizjs

def d3BVirial_mixture_dzizjzks(zs, Bijs):
r'''Calculate third mole fraction derivative of the `B` third virial
coefficient from a matrix of virial cross-coefficients.
.. math::
\frac{\partial^3 B}{\partial x_i \partial x_j \partial x_k} = 0
Parameters
----------
zs : list[float]
Mole fractions of each species, [-]
Bijs : list[list[float]]
Second virial coefficient in density form [m^3/mol]
Returns
-------
d3B_dzizjzks : list[list[list[float]]]
Third mole fraction derivatives of second virial coefficient in
density form [m^3/mol]
Notes
-----
Examples
--------
>>> Bijs = [[-6.24e-06, -2.013e-05, -3.9e-05], [-2.01e-05, -4.391e-05, -6.46e-05], [-3.99e-05, -6.46e-05, -0.00012]]
>>> zs = [.5, .3, .2]
>>> d3BVirial_mixture_dzizjzks(zs=zs, Bijs=Bijs)
[[[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]], [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]], [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]]
'''
N = len(Bijs)
d3B_dzizjzks = [[[0.0]*N for _ in range(N)] for _ in range(N)] # numba: delete
# d3B_dzizjzks = zeros((N, N, N)) # numba: uncomment
return d3B_dzizjzks

def BVirial_Pitzer_Curl(T, Tc, Pc, omega, order=0):
r'''Calculates the second virial coefficient using the model in [1]_.
Designed for simple calculations.
Expand Down
23 changes: 22 additions & 1 deletion tests/test_virial.py
Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@

import pytest
import numpy as np
from fluids.numerics import linspace, assert_close, assert_close1d, assert_close2d, assert_close3d, derivative
from fluids.numerics import linspace, assert_close, assert_close1d, assert_close2d, assert_close3d, derivative, jacobian, hessian
from chemicals.virial import *
from chemicals import rho_to_Vm
from fluids.constants import R as _R
Expand Down Expand Up @@ -598,3 +598,24 @@ def test_d3CVirial_mixture_dT3_Orentlicher_Prausnitz():
zs = [.5, .3, .2]
ans = d3CVirial_mixture_dT3_Orentlicher_Prausnitz(zs, Cijs, dCij_dTs, d2Cij_dT2s, d3Cij_dT3s)
assert_close(ans, -3.7356470379612563e-16, rtol=1e-14)

def test_dBVirial_mixture_dzs():
Bijs = [[-6.24e-06, -2.013e-05, -3.9e-05], [-2.01e-05, -4.391e-05, -6.46e-05], [-3.99e-05, -6.46e-05, -0.00012]]
zs = [.5, .3, .2]
calc = dBVirial_mixture_dzs(zs=zs, Bijs=Bijs)
expect = [-3.4089e-05, -7.2301e-05, -0.00012621]
assert_close1d(calc, expect, rtol=1e-13)

numerical = jacobian(BVirial_mixture, zs, args=(Bijs,), perturbation=1e-7)
assert_close1d(numerical, expect, rtol=1e-7)


def test_d2BVirial_mixture_dzizjs():
Bijs = [[-6.24e-06, -2.013e-05, -3.9e-05], [-2.01e-05, -4.391e-05, -6.46e-05], [-3.99e-05, -6.46e-05, -0.00012]]
zs = [.5, .3, .2]
calc = d2BVirial_mixture_dzizjs(zs=zs, Bijs=Bijs)
expect = [[-1.248e-05, -4.023e-05, -7.89e-05], [-4.023e-05, -8.782e-05, -0.0001292], [-7.89e-05, -0.0001292, -0.00024]]
assert_close2d(calc, expect, rtol=1e-13)

numerical = hessian(BVirial_mixture, zs, args=(Bijs,), perturbation=25e-5)
assert_close1d(numerical, expect, rtol=1e-7)

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